Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs4405407 chr12:103942457 A/G 0.000114 475 31.37 30.3 36.2 KM Plot
PRAD rs4410378 chr22:18451391 G/A 3.62E-6 484 31.12 32.22 26.58 KM Plot
PRAD rs4411531 chr17:64363200 C/T 0.000103 494 31.23 30 21.2 KM Plot
PRAD rs4423634 chr2:178790614 G/C 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs4424012 chr5:171764158 C/T 1.63E-6 494 27.97 32.43 28.63 KM Plot
PRAD rs4439194 chr9:72827074 C/G 1.75E-5 492 30.87 31.35 22.45 KM Plot
PRAD rs4440454 chr6:26997995 G/T 4.96E-5 493 30.73 31.92 26.92 KM Plot
PRAD rs4452598 chr5:154117932 G/A 7.9E-7 480 29.32 33.07 30.2 KM Plot
PRAD rs4463020 chr4:666212 G/T 0.000108 494 41.7 30.08 31.25 KM Plot
PRAD rs4468046 chr8:143378970 G/A 6.37E-5 484 30.97 31.87 28.13 KM Plot
PRAD rs4492996 chr15:68113240 A/G 0.000157 493 33.37 28.23 26.02 KM Plot
PRAD rs4493469 chr3:46177992 T/C 0.000125 479 29.97 35.5 29.57 KM Plot
PRAD rs452141 chr16:85736871 C/T 9.91E-5 485 32.03 28.3 26.62 KM Plot
PRAD rs4526415 chr9:97377525 C/T 1.67E-5 485 17.07 25.67 32.43 KM Plot
PRAD rs4553000 chr9:34223553 C/T 9.5E-5 491 31.07 29.8 31.3 KM Plot